footprintDB January 2025 version

Hi, we just updated the motifs, transcription factors and sites in the database footprintDB. 

The January 2025 version adds:

1)  Motifs inferred from  protein-DNA complexes at the Protein Data Bank, added to 3d-footprint by  19/12/2024; note the complexes are also used to annotate interface residues  of all transcription factors (TFs).

2) New plant data at EEADannot, with TFs assigned to Plant-TFClass families (see repo).

The current contents include:

	total	unique	metazoa	plants
Transcription Factors	9976	7322	4839	1256
DNA motifs (PSSM)	17117	14828	8893	2962
DNA Binding Sites/Sequences	68358

The footprintDB motifs have also been synced with RSAT (see repo), see you soon,

Bruno