a new tutorial on the analysis pan-genomes using GET_HOMOLOGUES and GET_HOMOLOGUES-EST is now available. After a short introduction, where the main concepts are illustrated, the remaining sections cover the installation and typical operations required to analyze and annotate genomes and transcriptomes from a pan-genome perspective, in which individuals or species contribute genetic material to a pool.
The examples include both bacterial sequences in GenBank format and plant transcripts. This tutorial has been created for a two-day workshop to be held at BIOS (Manizales, Colombia) next week, with title "From genomes to pangenomes: understanding variation among individuals and species":
The tutorial can be found at: http://digital.csic.es/handle/10261/146411
Code, sample datasets and documentation are available at:
https://github.com/eead-csic-compbio/get_homologues
Suggestions and error reports are welcome,
Bruno
