Hi, we just updated the motifs, transcription factors and sites in the database footprintDB.
This version adds:
1) Motifs inferred from protein-DNA complexes at the Protein
Data Bank, added to 3d-footprint by 19/08/2025; note the complexes are also used to annotate interface residues of all transcription factors (TFs).
2) New plant data at EEADannot, with TFs assigned to Plant-TFClass families (see repo).
The current contents include:
The footprintDB motifs have also been synced with RSAT (see repo), see you soon,
Bruno
