31 de mayo de 2022

footprintDB May 2022 version

Hi, we just updated the motifs, transcription factors and sites in the database footprintDB

The 31052022 version includes JASPAR2022 and new plant data at EEADannot (see repo), plus all protein-DNA interface residues have been recomputed after bringing 3d-footprint up to speed. 

The current contents include:

Transcription Factors9920746249401217
DNA motifs (PSSM)146151212980932233
DNA Binding Sites/Sequences46154

Sequence logo of transcription factor WRKY71, read more here.

The footprintDB motifs will be shortly synced with the RSAT servers so that they can be used there as well, see you soon,

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