Course on scripting with the Linux shell

 Hi,  Carlos Cantalapiedra and me recently put together teaching material about scripting in the linux terminal.

The material can be found at repository https://github.com/eead-csic-compbio/scripting_linux_shell 

There are five sessions and the goal is for you to learn the basics of the Linux shell and scripting for data sciences such as genomics and plant breeding:

session	title	required time	URL
0	Setup	prior to course	session 0
1	Linux basics and files	2h	session 1
2	Processes and scripts	2h	session 2
3	Parsing with regular expressions	2h	session 3
4	Perl one-liners	2h	session 4
5	Advanced scripts	2h	session 5

Figure of the standard streams, taken from https://en.wikipedia.org/wiki/Standard_streams

 

If you spot errors please send pull requests, hope this helps some of you out there,

Bruno 

PD si prefieres aprender en español echa un vistazo a https://github.com/vinuesa/intro2linux