Hi, Najla Ksouri and me recently put together teaching material about Bioinformatics resources and best-practices for plant-breeders.
The material can be found at https://eead-csic-compbio.github.io/bioinformatics
It comprises four sessions and the goal is for you to explore some bioinformatics resources and databases which can be useful in plant breeding and genomics, using both standalone and Web-based tools. The last two sessions are about reproducible analysis practices and software benchmarks.
| session | title | required time | URL | |
|---|---|---|---|---|
| 1 | Annotation of coding sequences | 4h | session 1 | |
| 2 | Analysis of non-coding sequences | 4h | session 2 | |
| 3 | Reproducible analysis practices | 2h | session 3 | |
| 4 | Benchmarks | 2h | session 4 | |
If you spot errors please send pull requests, hope this helps some of you out there,
Bruno
