Hi, we just updated the motifs, transcription factors and sites in the database footprintDB.
The 31052022 version includes JASPAR2022 and new plant data at EEADannot (see repo), plus all protein-DNA interface residues have been recomputed after bringing 3d-footprint up to speed.
The current contents include:
total | unique | metazoa | plants | |
---|---|---|---|---|
Transcription Factors | 9920 | 7462 | 4940 | 1217 |
DNA motifs (PSSM) | 14615 | 12129 | 8093 | 2233 |
DNA Binding Sites/Sequences | 46154 |
The footprintDB motifs will be shortly synced with the RSAT servers so that they can be used there as well, see you soon,
Bruno
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